run_metadata: 51310
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51310 | SRR9903402 | SRX6655217 | SRS5216353 | SRP217413 | PRJNA526570 | Cardiac neural crest contributes to cardiomyocytes in amniotes and heart regeneration in zebrafish | PRJNA526570 | Whole Genome Sequencing | A gene expression analysis of neural crest contributions to zebrafish heart regeneration. | FAC sorted 21dpa GFP positive cells from adult Tg 4.9sox10:eGFP cardiac ventricles | 21dpa Sox10positive | 21dpa sox10 positive | strain:Tg 4.9sox10:eGFP|dev stage:adult|sex:not applicable|tissue:adult ventricle|BioSampleModel:Model organism or animal | 21dpa sox10 positive | Sox10 positive | Sox10 positive | Takara/Clontech SMART Seq V4 Ultra low Input RNAseq Kit using manufacturer's protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | SINGLE | ILLUMINA | Illumina HiSeq 2500 | SRP217413 | 21dpa_sox10pos_Rep1.fastq.gz 21dpa_sox10pos_Rep2.fastq.gz | fastq fastq | 5505584050.0 | 110111681.0 | 21dpa sox10pos Rep1.fastq.gz | 0:50 | A:1575542391;C:1178076405;G:1184130971;T:1567810031;N:24252 | 50 | 1575542391 | 1178076405 | 1184130971 | 1567810031 | 24252 | SRX6655217 | SRS5216353 | SRA933745 | California Institute of Technology|Biology and Biological Engineering | California Institute of Technology | 1 | 0.89136 | 0.11182 | 0.80649 | 0.49369 | 50 | B | usable mapping rate | illumina | hiseq_era | unknown | cdna_unspecified | unknown | sc | single_cell_plate | smartseq | United States | 2019-08-06 | Adult | Adult | Heart | Cardiovascular System |