run_metadata: 51146
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51146 | SRR8558589 | SRX5360216 | SRS4350804 | SRP185448 | PRJNA521037 | Danio rerio Raw sequence reads | PRJNA521037 | Other | These samples were obtained from the brain tissues of Zebrafish. | Model organism or animal sample from zebrafish transcriptome | Zebrafish Brain Male 2 | breed:WUHAN Zebrafish|age:6 month|sex:male|tissue:Brain|BioSampleModel:Model organism or animal | L1 F b 3 | S514 03A CHG022888 | S514 03A CHG022888 | Total RNA | RNA-Seq | TRANSCRIPTOMIC | RANDOM PCR | PAIRED | ILLUMINA | HiSeq X Ten | SRP185448 | reverse_paired_S514_03A_CHG022888-L1-F-b-3-TAGCTT_L004_R2.fastq.gz forward_paired_S514_03A_CHG022888-L1-F-b-3-TAGCTT_L004_R1.fastq.gz | fastq fastq | 11155488410.0 | 37300230.0 | forward paired S514 03A CHG022888 L1 F b 3 TAGCTT L004 R1.fastq.gz | 0:149.54 1:149.54 | A:3115393522;C:2430838355;G:2464586732;T:3143761507;N:908294 | 149 | 149 | 3115393522 | 2430838355 | 2464586732 | 3143761507 | 908294 | SRX5360216 | SRS4350804 | SRA848281 | Shanghai Ocean University|Developmental Biology | Shanghai Ocean University | 2 | 0.91537 | 0.91755 | 0.1702 | 0.16846 | 0.70421 | 0.71104 | 0.49272 | 0.49841 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2019-02-11 | Adult | Adult | Brain | Nervous System |