run_metadata: 51145
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51145 | SRR8559050 | SRX5360563 | SRS4351135 | SRP185448 | PRJNA521037 | Danio rerio Raw sequence reads | PRJNA521037 | Other | These samples were obtained from the brain tissues of Zebrafish. | Model organism or animal sample from zebrafish transcriptome | Zebrafish Brain Male 3 | breed:WUHAN Zebrafish|age:6 month|sex:male|tissue:Brain|BioSampleModel:Model organism or animal | L5 F b 2 | S514 03A CHG022892 | S514 03A CHG022892 | Total RNA | RNA-Seq | TRANSCRIPTOMIC | RANDOM PCR | PAIRED | ILLUMINA | HiSeq X Ten | SRP185448 | forward_paired_S514_03A_CHG022892-L5-F-b-2-GATCAG_L008_R1.fastq.gz reverse_paired_S514_03A_CHG022892-L5-F-b-2-GATCAG_L008_R2.fastq.gz | fastq fastq | 9641784182.0 | 32223361.0 | forward paired S514 03A CHG022892 L5 F b 2 GATCAG L008 R1.fastq.gz | 0:149.61 1:149.61 | A:2692586270;C:2100635383;G:2134009452;T:2713885084;N:667993 | 149 | 149 | 2692586270 | 2100635383 | 2134009452 | 2713885084 | 667993 | SRX5360563 | SRS4351135 | SRA848314 | Shanghai Ocean University|Developmental Biology | Shanghai Ocean University | 2 | 0.90518 | 0.90831 | 0.14842 | 0.14748 | 0.69976 | 0.70824 | 0.51783 | 0.52198 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2020-03-11 | Adult | Adult | Brain | Nervous System |