run_metadata: 51058
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51058 | SRR8457163 | SRX5263756 | SRS4264532 | SRP180326 | PRJNA515927 | Effects of acrylamide on zebrafish brain | PRJNA515927 | Other | Here we used a multi omics approach with proteomic and transcriptomic methodologies to identify the main key events involved in the development of neurotoxicity in zebrafish brain post acute exposure to 0.75 mM acrylamide for 72h. | ACR5 | isolate:ACRYLAMIDE 5|dev stage:ADULT|sex:male|tissue:BRAIN|treatment:ACRYLAMIDE 0 75 mM|BioSampleModel:Model organism or animal | RNA Seq of Danio rerio: adult brain acrylamide | RL BACR5 | RL BACR5 | Libraries were made with TruSeq Stranded mRNA Library Prep Kit | RNA-Seq | TRANSCRIPTOMIC | RANDOM PCR | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP180326 | RL_BACR5_USPD16083281-D708-AK1544_H33JJDMXX_L1_1.fq.gz RL_BACR5_USPD16083281-D708-AK1544_H33JJDMXX_L1_2.fq.gz RL_BACR5_USPD16083281-D708-AK1544_H33JJDMXX_L2_1.fq.gz RL_BACR5_USPD16083281-D708-AK1544_H33JJDMXX_L2_2.fq.gz | fastq fastq fastq fastq | 13706450700.0 | 45688169.0 | RL BACR5 USPD16083281 D708 AK1544 H33JJDMXX L1 1.fq.gz | 0:150 1:150 | A:4135905547;C:2716663467;G:2914788685;T:3939064139;N:28862 | 150 | 150 | 4135905547 | 2716663467 | 2914788685 | 3939064139 | 28862 | SRX5263756 | SRS4264532 | SRA836494 | Mississippi State University|Institute for Genomics, Biocomputing & Biotechnolo | Mississippi State University | 2 | 0.91293 | 0.91331 | 0.2028 | 0.20076 | 0.70461 | 0.70646 | 0.52084 | 0.52041 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | random_priming | trueseq | bulk | unknown | unknown | United States | 2019-09-16 | Adult | Adult | Brain | Nervous System |