run_metadata: 50744
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50744 | SRR8293704 | SRX5108302 | SRS4117715 | SRP172922 | PRJNA509052 | SMPs+NOM+Cu | PRJNA509052 | Other | Polystyrene Microplastics as a Vector for Copper Exposure in Zebrafish Danio rerio: Impacts of Natural Organic Matter on Accumulation and Toxic Effects | Cu 3 | Cu 3 | strain:AB|age:18 wpf|dev stage:maturity|sex:not determined|tissue:liver|BioSampleModel:Model organism or animal | Cu 3 | Cu 3 | Cu 3 | Danio rerio liver | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina HiSeq 2500 | SRP172922 | Me1R3_20180118_GCGAGT_S66_L005_R1_001.fastq.gz Me1R3_20180118_GCGAGT_S66_L005_R2_001.fastq.gz | fastq fastq | 8744057264.0 | 28953832.0 | Me1R3 20180118 GCGAGT S66 L005 R1 001.fastq.gz | 0:151 1:151 | A:2285359674;C:2075565607;G:2170998901;T:2211924322;N:208760 | 151 | 151 | 2285359674 | 2075565607 | 2170998901 | 2211924322 | 208760 | SRX5108302 | SRS4117715 | SRA820198 | Nanjing University|School of the Environment | Nanjing University | 2 | 0.96069 | 0.96777 | 0.023 | 0.02065 | 0.84867 | 0.85066 | 0.32219 | 0.31787 | 151 | 151 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2020-01-08 | Adult | Adult | Liver | Liver and Biliary System |