run_metadata: 50537
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50537 | SRR8134460 | SRX4955492 | SRS3996629 | SRP167225 | PRJNA501843 | Characterization of Transcriptomic Profile in Early Zebrafish PGCs by Single Cell Sequencing | PRJNA501843 | Other | Single cell RNA seq was applied for studying the transcriptomic profile in early zebrafish PGCsprimordial germ cells by choosing three time points during zebrafish embryonic development. The three time points were 6hpfhpf also called shield stage 11hpfalso called 3 somite stage and 24hpfalso called prim 5 stage. | H24 2 | strain:AB|isolate:missing|breed:missing|cultivar:missing|ecotype:missing|dev stage:24hpf biological replicate 2|sex:missing|tissue:PGC|BioSampleModel:Model organism or animal | RNA Seq of Danio rerio: PGC | H24 2 | H24 2 | smart2 | RNA-Seq | TRANSCRIPTOMIC | other | PAIRED | ILLUMINA | Illumina HiSeq 2500 | SRP167225 | H24_2_R1.fastq H24_2_R2.fastq | fastq fastq | 1003243000.0 | 4012972.0 | H24 2 R1.fastq | 0:125 1:125 | A:275192369;C:227024454;G:228346661;T:272676506;N:3010 | 125 | 125 | 275192369 | 227024454 | 228346661 | 272676506 | 3010 | SRX4955492 | SRS3996629 | SRA800727 | Shanghai Institute of Biochemistry and Cell Biology, CAS|State Key Laboratory of cell Biology | Shanghai Institute of Biochemistry and Cell Biology, CAS | 2 | 0.94467 | 0.94348 | 0.06361 | 0.06541 | 0.8423 | 0.84478 | 0.51257 | 0.51745 | 125 | 125 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | other | unknown | sc_generic | single_cell_generic | generic-scrnaseq-only | China | 2019-02-01 | Pharyngula | Embryo | Undetermined | Embryo Imprecise |