run_metadata: 49638
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49638 | SRR8002817 | SRX4833731 | SRS3900635 | SRP165143 | PRJNA495439 | Danio rerio strain:TU Genome sequencing | PRJNA495439 | Whole Genome Sequencing | To assessment mixture effects of zenrafish two mixtures and their twelve components were tested by reduced zebrfish transcriptome approach. | 27# 10 | breed:TU|dev stage:32hpf|sex:pooled male and female|tissue:embryo|identified by:CLP 10|BioSampleModel:Model organism or animal | CLP 10 | 59 | 59 | embryo post 8 32hpf post CLP exposure 0 3m | AMPLICON | TRANSCRIPTOMIC | PCR | SINGLE | ION_TORRENT | Ion Torrent Proton | SRP165143 | 27#-10.fastq.gz | fastq | 104008724.0 | 965698.0 | 27# 10.fastq.gz | 0:107.70 | A:24801976;C:27309362;G:26975919;T:24921467;N:0 | 107 | 24801976 | 27309362 | 26975919 | 24921467 | 0 | SRX4833731 | SRS3900635 | SRA792561 | Zebrafish embryo|School of the environment | Zebrafish embryo | 1 | 0.9444 | 0.00017 | 0.9709 | 0.47865 | 99 | B | usable mapping rate | ion_torrent | ion_torrent | unknown | random_priming | unknown | bulk | unknown | unknown | Unknown | 2019-11-10 | Pharyngula | Embryo | Embryo Imprecise | All anatomical structures |