run_metadata: 49634
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49634 | SRR8002813 | SRX4833735 | SRS3900638 | SRP165143 | PRJNA495439 | Danio rerio strain:TU Genome sequencing | PRJNA495439 | Whole Genome Sequencing | To assessment mixture effects of zenrafish two mixtures and their twelve components were tested by reduced zebrfish transcriptome approach. | 34# 3 | breed:TU|dev stage:32hpf|sex:pooled male and female|tissue:embryo|identified by:BaP 3|BioSampleModel:Model organism or animal | BaP 3 | 62 | 62 | embryo post 8 32hpf post BaP exposure 0.022m | AMPLICON | TRANSCRIPTOMIC | PCR | SINGLE | ION_TORRENT | Ion Torrent Proton | SRP165143 | 34#-3.fastq.gz | fastq | 71087436.0 | 666842.0 | 34# 3.fastq.gz | 0:106.60 | A:16558386;C:19113942;G:18670501;T:16744607;N:0 | 106 | 16558386 | 19113942 | 18670501 | 16744607 | 0 | SRX4833735 | SRS3900638 | SRA792561 | Zebrafish embryo|School of the environment | Zebrafish embryo | 1 | 0.94539 | 0.00016 | 0.97104 | 0.44421 | 89 | B | usable mapping rate | ion_torrent | ion_torrent | unknown | random_priming | unknown | bulk | unknown | unknown | Unknown | 2019-11-10 | Pharyngula | Embryo | Embryo Imprecise | All anatomical structures |