run_metadata: 49625
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49625 | SRR8002804 | SRX4833744 | SRS3900647 | SRP165143 | PRJNA495439 | Danio rerio strain:TU Genome sequencing | PRJNA495439 | Whole Genome Sequencing | To assessment mixture effects of zenrafish two mixtures and their twelve components were tested by reduced zebrfish transcriptome approach. | 47# 5 | breed:TU|dev stage:32hpf|sex:pooled male and female|tissue:embryo|identified by:TCS 5|BioSampleModel:Model organism or animal | TCS 5 | 80 | 80 | embryo post 8 32hpf post TCS exposure 0.001m | AMPLICON | TRANSCRIPTOMIC | PCR | SINGLE | ION_TORRENT | Ion Torrent Proton | SRP165143 | 47#-5.fastq.gz | fastq | 127707981.0 | 1191279.0 | 47# 5.fastq.gz | 0:107.20 | A:30225006;C:33995053;G:33434440;T:30053482;N:0 | 107 | 30225006 | 33995053 | 33434440 | 30053482 | 0 | SRX4833744 | SRS3900647 | SRA792561 | Zebrafish embryo|School of the environment | Zebrafish embryo | 1 | 0.97025 | 0.00022 | 0.97104 | 0.47406 | 99 | B | usable mapping rate | ion_torrent | ion_torrent | unknown | random_priming | unknown | bulk | unknown | unknown | Unknown | 2018-10-11 | Pharyngula | Embryo | Embryo Imprecise | All anatomical structures |