run_metadata: 49396
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49396 | SRR7896796 | SRX4734229 | SRS3816346 | SRP162489 | PRJNA492836 | Danio rerio Transcriptome or Gene expression | PRJNA492836 | Transcriptome Analysis | to study the feasibility of gene therapy of TNNT2 mutant related cardiomyopathy | non transgene homozyous mutant | strain:Tgcmlc2:TetON; tnnt2a p2A mKate2&tnnt2a+/ |cultivar:not applicable|ecotype:not applicable|age:3 dpf stage:larval|sex:pooled male and female|tissue:whole larvae|BioSampleModel:Model organism or animal | RNA seq of non transgene tnnt2a homozygous mutant zebrafish post Dox induction | non transgene homozyous mutant | non transgene homozyous mutant | In our project we sequence 4 samples use Illumina Hiseq platform and on average we generated about 6.56Gb bases from each sample. We also map clean reads to reference genome on average 71.49% reads are mapped | RNA-Seq | TRANSCRIPTOMIC | RANDOM | SINGLE | ILLUMINA | Illumina HiSeq 2500 | SRP162489 | transgene non mutant_L1_1.fq.gz transgene non mutant_L1_2.fq.gz | fastq fastq | 6541491300.0 | 21804971.0 | transgene non mutant L1 1.fq.gz | 0:150 1:150 | A:1689774214;C:1582775230;G:1591564227;T:1676650852;N:726777 | 150 | 150 | 1689774214 | 1582775230 | 1591564227 | 1676650852 | 726777 | SRX4734229 | SRS3816346 | Children's hospital of Fudan University | 2 | 0.89333 | 0.89894 | 0.05656 | 0.05595 | 0.66665 | 0.66888 | 0.46433 | 0.46204 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2018-09-24 | Larval | Larval | Whole Organism | All anatomical structures |