run_metadata: 49394
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49394 | SRR7896794 | SRX4734231 | SRS3816348 | SRP162489 | PRJNA492836 | Danio rerio Transcriptome or Gene expression | PRJNA492836 | Transcriptome Analysis | to study the feasibility of gene therapy of TNNT2 mutant related cardiomyopathy | non homozygous mutant | strain:tnnt2a+/ |cultivar:not applicable|ecotype:not applicable|age:3 dpf stage:larval|sex:pooled male and female|tissue:whole larvae|BioSampleModel:Model organism or animal | RNA seq of non tnnt2a homozygous mutant zebrafish post Dox induction | non homozygous mutant | non homozygous mutant | In our project we sequence 4 samples use Illumina Hiseq platform and on average we generated about 6.56Gb bases from each sample. We also map clean reads to reference genome on average 71.49% reads are mapped | RNA-Seq | TRANSCRIPTOMIC | RANDOM | SINGLE | ILLUMINA | Illumina HiSeq 2500 | SRP162489 | non mutant_L1_1.fq.gz non mutant_L1_2.fq.gz | fastq fastq | 6561723600.0 | 21872412.0 | non mutant L1 2.fq.gz | 0:150 1:150 | A:1689788269;C:1592764528;G:1601424044;T:1677002898;N:743861 | 150 | 150 | 1689788269 | 1592764528 | 1601424044 | 1677002898 | 743861 | SRX4734231 | SRS3816348 | Children's hospital of Fudan University | 2 | 0.8991 | 0.90343 | 0.05565 | 0.05598 | 0.66752 | 0.66929 | 0.4567 | 0.46188 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2018-09-24 | Larval | Larval | Whole Organism | All anatomical structures |