run_metadata: 49393
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49393 | SRR7896793 | SRX4734232 | SRS3816349 | SRP162489 | PRJNA492836 | Danio rerio Transcriptome or Gene expression | PRJNA492836 | Transcriptome Analysis | to study the feasibility of gene therapy of TNNT2 mutant related cardiomyopathy | homozygous mutant | strain:tnnt2a / |cultivar:not applicable|ecotype:not applicable|age:3 dpf stage:larval|sex:pooled male and female|tissue:whole larvae|BioSampleModel:Model organism or animal | RNA seq of tnnt2a homozygous mutant zebrafish post Dox induction | homozygous mutant | homozygous mutant | In our project we sequence 4 samples use Illumina Hiseq platform and on average we generated about 6.56Gb bases from each sample. We also map clean reads to reference genome on average 71.49% reads are mapped | RNA-Seq | TRANSCRIPTOMIC | RANDOM | SINGLE | ILLUMINA | Illumina HiSeq 2500 | SRP162489 | mutant_L1_1.fq.gz mutant_L1_2.fq.gz | fastq fastq | 6615980100.0 | 22053267.0 | mutant L1 2.fq.gz | 0:150 1:150 | A:1714364351;C:1596934293;G:1606676062;T:1697294755;N:710639 | 150 | 150 | 1714364351 | 1596934293 | 1606676062 | 1697294755 | 710639 | SRX4734232 | SRS3816349 | Children's hospital of Fudan University | 2 | 0.88229 | 0.88599 | 0.05373 | 0.05345 | 0.67042 | 0.67259 | 0.45764 | 0.46314 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2018-09-24 | Larval | Larval | Whole Organism | All anatomical structures |