run_metadata: 49249
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49249 | SRR7881080 | SRX4719722 | SRS3804946 | SRP162200 | PRJNA492186 | Danio rerio Genome sequencing | PRJNA492186 | Other | The transcriptome of zebrafish mutant and wt embryos. | mutant | zmynd10 mutant | strain:TU|age:30h|sex:not determined|tissue:whole body|phenotype:curve body|BioSampleModel:Model organism or animal | RNA Seq data of zmynd10 mutant | RNA Seq data of zmynd10 mutant | RNA Seq data of zmynd10 mutant | For each sample mRNA was extracted from the whole body of one individual and the standard RNA Seq library was constructed and subjected to Illumina PE125 sequencing | RNA-Seq | TRANSCRIPTOMIC | RT-PCR | PAIRED | ILLUMINA | Illumina HiSeq 2500 | SRP162200 | MT-blu_L5_I393.R1.clean.fastq.gz MT-blu_L5_I393.R2.clean.fastq.gz | fastq fastq | 4156063750.0 | 16624255.0 | MT blu L5 I393.R2.clean.fastq.gz | 0:125 1:125 | A:1084666899;C:1001943643;G:994799272;T:1074520227;N:133709 | 125 | 125 | 1084666899 | 1001943643 | 994799272 | 1074520227 | 133709 | SRX4719722 | SRS3804946 | SRA779493 | Ocean University of China|College of Marine Life Sciences | Ocean University of China | 2 | 0.97259 | 0.97221 | 0.07667 | 0.0775 | 0.70084 | 0.70199 | 0.4768 | 0.48903 | 125 | 125 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | other | unknown | bulk | unknown | unknown | China | 2018-09-20 | Pharyngula | Embryo | Trunk | Surface Structure |