run_metadata: 49067
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49067 | SRR7637837 | SRX4501373 | SRS3622140 | SRP156164 | PRJNA484127 | Danio rerio Raw sequence reads | PRJNA484127 | Whole Genome Sequencing | The toxic of MPs on Danio rerio gut. | BeadTwo | strain:not collected|age:Adult|sex:pooled male and female|tissue:Gut8|BioSampleModel:Model organism or animal | Bead2 | BeadTwo | BeadTwo | Analysis the zebrafish gut DEGs post uptake MPs with different shapes | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina HiSeq 2500 | SRP156164 | MB2_20180308_CGAACT_S38_L002_R1_001.fastq.gz MB2_20180308_CGAACT_S38_L002_R2_001.fastq.gz | fastq fastq | 8790666132.0 | 29108166.0 | MB2 20180308 CGAACT S38 L002 R2 001.fastq.gz | 0:151 1:151 | A:2308382253;C:2076549882;G:2139570034;T:2265871851;N:292112 | 151 | 151 | 2308382253 | 2076549882 | 2139570034 | 2265871851 | 292112 | SRX4501373 | SRS3622140 | SRA750253 | Nanjing University|School of Environment | Nanjing University | 2 | 0.9414 | 0.94541 | 0.04298 | 0.04231 | 0.74162 | 0.74578 | 0.54352 | 0.54266 | 151 | 151 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2020-09-01 | Adult | Adult | Whole Organism | All anatomical structures |