run_metadata: 49065
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49065 | SRR7637835 | SRX4501375 | SRS3622142 | SRP156164 | PRJNA484127 | Danio rerio Raw sequence reads | PRJNA484127 | Whole Genome Sequencing | The toxic of MPs on Danio rerio gut. | FiberThree | strain:not collected|age:Adult|sex:pooled male and female|tissue:Gut12|BioSampleModel:Model organism or animal | Fiber3 | FiberThree | FiberThree | Analysis the zebrafish gut DEGs post uptake MPs with different shapes | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina HiSeq 2500 | SRP156164 | SFb3_20180308_CTGAGC_S42_L002_R2_001.fastq.gz SFb3_20180308_CTGAGC_S42_L002_R1_001.fastq.gz | fastq fastq | 8052778660.0 | 26664830.0 | SFb3 20180308 CTGAGC S42 L002 R2 001.fastq.gz | 0:151 1:151 | A:2108582357;C:1909439595;G:1976426950;T:2058076799;N:252959 | 151 | 151 | 2108582357 | 1909439595 | 1976426950 | 2058076799 | 252959 | SRX4501375 | SRS3622142 | SRA750253 | Nanjing University|School of Environment | Nanjing University | 2 | 0.94666 | 0.94941 | 0.03962 | 0.0395 | 0.75408 | 0.75737 | 0.52613 | 0.54345 | 151 | 151 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2020-09-01 | Adult | Adult | Whole Organism | All anatomical structures |