run_metadata: 49063
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49063 | SRR7637833 | SRX4501377 | SRS3622143 | SRP156164 | PRJNA484127 | Danio rerio Raw sequence reads | PRJNA484127 | Whole Genome Sequencing | The toxic of MPs on Danio rerio gut. | FragmentOne | strain:not collected|age:Adult|sex:pooled male and female|tissue:Gut4|BioSampleModel:Model organism or animal | Fragment1 | FragmentOne | FragmentOne | Analysis the zebrafish gut DEGs post uptake MPs with different shapes | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina HiSeq 2500 | SRP156164 | FG1_20180308N_CCAGTT_S82_R1_001.fastq.gz FG1_20180308N_CCAGTT_S82_R2_001.fastq.gz | fastq fastq | 10309384268.0 | 34137034.0 | FG1 20180308N CCAGTT S82 R2 001.fastq.gz | 0:151 1:151 | A:2711920404;C:2428019743;G:2538726593;T:2630683876;N:33652 | 151 | 151 | 2711920404 | 2428019743 | 2538726593 | 2630683876 | 33652 | SRX4501377 | SRS3622143 | SRA750253 | Nanjing University|School of Environment | Nanjing University | 2 | 0.95319 | 0.81466 | 0.0366 | 0.02838 | 0.76729 | 0.78139 | 0.54501 | 0.54542 | 151 | 151 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2018-08-02 | Adult | Adult | Whole Organism | All anatomical structures |