run_metadata: 49062
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49062 | SRR7637832 | SRX4501378 | SRS3622145 | SRP156164 | PRJNA484127 | Danio rerio Raw sequence reads | PRJNA484127 | Whole Genome Sequencing | The toxic of MPs on Danio rerio gut. | ControlThree | strain:not collected|age:Adult|sex:pooled male and female|tissue:Gut3|BioSampleModel:Model organism or animal | Control3 | ControlThree | ControlThree | Analysis the zebrafish gut DEGs post uptake MPs with different shapes | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina HiSeq 2500 | SRP156164 | ck3_20180308N_CATACC_S81_R2_001.fastq.gz ck3_20180308N_CATACC_S81_R1_001.fastq.gz | fastq fastq | 8156423852.0 | 27008026.0 | ck3 20180308N CATACC S81 R2 001.fastq.gz | 0:151 1:151 | A:2141586323;C:1928412128;G:2019757092;T:2066642037;N:26272 | 151 | 151 | 2141586323 | 1928412128 | 2019757092 | 2066642037 | 26272 | SRX4501378 | SRS3622145 | SRA750253 | Nanjing University|School of Environment | Nanjing University | 2 | 0.94991 | 0.80786 | 0.03753 | 0.02937 | 0.743 | 0.7581 | 0.52953 | 0.51767 | 151 | 151 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2020-09-01 | Adult | Adult | Whole Organism | All anatomical structures |