run_metadata: 48989
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48989 | SRR7549097 | SRX4415268 | SRS3568563 | SRP154651 | PRJNA482207 | zebrafish olfactory mucosae transcriptome | PRJNA482207 | Other | To understand the gene expression changes of olfactory mucosae of zebrfish we sequenced their transcriptome. | OE | strain:AB|age:missing|dev stage:adult|sex:missing|tissue:olfactory mucosa|BioSampleModel:Model organism or animal | RNA Seq of zebrafish olfactory mucosa | OE t1 | OE t1 | zebrafish olfactory mucosa test replicate 1 | RNA-Seq | TRANSCRIPTOMIC | RANDOM | PAIRED | ILLUMINA | Illumina HiSeq 4000 | SRP154651 | 7545597900.0 | 25151993.0 | Tfb2 H7MTJALXX L2 2.clean.fq.gz | 0:150 1:150 | A:2239378192;C:1532314979;G:1546665402;T:2226389553;N:849774 | 150 | 150 | 2239378192 | 1532314979 | 1546665402 | 2226389553 | 849774 | SRX4415268 | SRS3568563 | SRA743421 | Institute of Hydrobiology|Chinese Academy of Sciences | Institute of Hydrobiology | 2 | 0.88279 | 0.89146 | 0.24112 | 0.24221 | 0.72829 | 0.73462 | 0.50037 | 0.4932 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2018-07-21 | Adult | Adult | Brain | Nervous System |