run_metadata: 48730
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48730 | SRR7789584 | SRX4644419 | SRS3742489 | SRP159670 | PRJNA475635 | Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis | PRJNA475635 | Other | The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis. | DMSO 12hpf 2 S8 | strain:5D|isolate:104|dev stage:12 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal | DMSO 12hpf 2 S8 | DMSO 12hpf 2 S8 | DMSO 12hpf 2 S8 | Nextera XT DNA Library Prep kit | AMPLICON | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina MiniSeq | SRP159670 | DMSO-12hpf-2_S8_L001_R1_001.fastq.gz DMSO-12hpf-2_S8_L001_R2_001.fastq.gz | fastq fastq | 126754105.0 | 599652.0 | DMSO 12hpf 2 S8 L001 R1 001.fastq.gz | 0:105.62 1:105.76 | A:32875248;C:30352965;G:30543115;T:32575671;N:407106 | 105 | 105 | 32875248 | 30352965 | 30543115 | 32575671 | 407106 | SRX4644419 | SRS3742489 | SRA767209 | University of California, Riverside|Environmental Sciences | University of California, Riverside | 2 | 0.9631 | 0.96229 | 0.00019 | 0.00019 | 0.99928 | 0.99928 | 0.45939 | 0.44598 | 92 | 92 | B | B | biological fallback assumption | illumina | miseq | unknown | random_priming | nextera | bulk | unknown | unknown | United States | 2018-09-05 | Segmentation | Embryo | Embryo Imprecise | All anatomical structures |