run_metadata: 48729
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48729 | SRR7789583 | SRX4644420 | SRS3742491 | SRP159670 | PRJNA475635 | Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis | PRJNA475635 | Other | The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis. | DMSO 12hpf 3 S9x | strain:5D|isolate:105|dev stage:12 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal | DMSO 12hpf 3 S9x | DMSO 12hpf 3 S9x | DMSO 12hpf 3 S9x | Nextera XT DNA Library Prep kit | AMPLICON | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina MiniSeq | SRP159670 | DMSO-12hpf-3_S9x_L001_R2_001.fastq.gz DMSO-12hpf-3_S9x_L001_R1_001.fastq.gz | fastq fastq | 106526213.0 | 483892.0 | DMSO 12hpf 3 S9x L001 R2 001.fastq.gz | 0:110.00 1:110.14 | A:27523846;C:25609135;G:25786277;T:27228622;N:378333 | 110 | 110 | 27523846 | 25609135 | 25786277 | 27228622 | 378333 | SRX4644420 | SRS3742491 | SRA767209 | University of California, Riverside|Environmental Sciences | University of California, Riverside | 2 | 0.95736 | 0.95668 | 0.00013 | 0.00011 | 0.99924 | 0.99926 | 0.45348 | 0.45617 | 77 | 77 | B | B | biological fallback assumption | illumina | miseq | unknown | random_priming | nextera | bulk | unknown | unknown | United States | 2018-09-05 | Segmentation | Embryo | Embryo Imprecise | All anatomical structures |