run_metadata: 48727
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48727 | SRR7789581 | SRX4644422 | SRS3742492 | SRP159670 | PRJNA475635 | Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis | PRJNA475635 | Other | The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis. | TDCIPP 12hpf 2 S17 | strain:5D|isolate:107|dev stage:12 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal | TDCIPP 12hpf 2 S17 | TDCIPP 12hpf 2 S17 | TDCIPP 12hpf 2 S17 | Nextera XT DNA Library Prep kit | AMPLICON | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina MiniSeq | SRP159670 | TDCIPP-12hpf-2_S17_L001_R1_001.fastq.gz TDCIPP-12hpf-2_S17_L001_R2_001.fastq.gz | fastq fastq | 127382315.0 | 575073.0 | TDCIPP 12hpf 2 S17 L001 R1 001.fastq.gz | 0:110.70 1:110.81 | A:32604644;C:30882861;G:31076792;T:32385804;N:432214 | 110 | 110 | 32604644 | 30882861 | 31076792 | 32385804 | 432214 | SRX4644422 | SRS3742492 | SRA767209 | University of California, Riverside|Environmental Sciences | University of California, Riverside | 2 | 0.94383 | 0.94386 | 0.00021 | 0.00022 | 0.99926 | 0.99926 | 0.41023 | 0.38711 | 151 | 151 | B | B | biological fallback assumption | illumina | miseq | unknown | random_priming | nextera | bulk | unknown | unknown | United States | 2018-09-05 | Segmentation | Embryo | Embryo Imprecise | All anatomical structures |