run_metadata: 48676
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48676 | SRR7789530 | SRX4644473 | SRS3742541 | SRP159670 | PRJNA475635 | Tris1 3 dichloro 2 propyl phosphate Exposure During Early Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis | PRJNA475635 | Other | The objective of this project was to rely on mRNA sequencing and amplicon sequencing to test the hypothesis that tris1 3 dichloro 2 propyl phosphate TDCIPP interferes with pathways involved in early zebrafish embryogenesis. | TDCIPP 156uM 6hpf 3 S2 | strain:5D|isolate:39|dev stage:6 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal | TDCIPP 156uM 6hpf 3 S2 | TDCIPP 156uM 6hpf 3 S2 | TDCIPP 156uM 6hpf 3 S2 | QuantSeq three prime mRNA Seq Library Prep Kit FWD | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | SINGLE | ILLUMINA | Illumina MiniSeq | SRP159670 | TDCIPP-156uM-6hpf-3_S2_L001_R1_001.fastq.gz | fastq | 146721941.0 | 1946057.0 | TDCIPP 156uM 6hpf 3 S2 L001 R1 001.fastq.gz | 0:75.39 1:0 | A:41904864;C:26299084;G:36125770;T:42365277;N:26946 | 75 | 0 | 41904864 | 26299084 | 36125770 | 42365277 | 26946 | SRX4644473 | SRS3742541 | SRA767209 | University of California, Riverside|Environmental Sciences | University of California, Riverside | 1 | 0.88799 | 0.15952 | 0.8056 | 0.6836 | 76 | B | usable mapping rate | illumina | miseq | 3prime | poly_a | lexogen | bulk | unknown | unknown | United States | 2018-09-05 | Gastrula | Embryo | Embryo Imprecise | All anatomical structures |