run_metadata: 48323
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48323 | SRR7223671 | SRX4130195 | SRS3344549 | SRP149041 | PRJNA473201 | Danio rerio Genome sequencing | PRJNA473201 | Other | To explore the potential mechanisms underlying wavy notochord caused in zebrafish embryos following exposure to polychlorinated diphenylsulfides | TrisCDPS3 | strain:Danio rerio|age:16 days|sex:pooled male and female|tissue:whole larvae|BioSampleModel:Model organism or animal | RNA Seq of TrisCDPS treated zf: 5 day larvae | TrisCDPS3 | TrisCDPS3 | TopHat FPKM FDR<0.05 | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina HiSeq 4000 | SRP149041 | TrisCDPS3_1.fq.gz TrisCDPS3_2.fq.gz | fastq fastq | 9172719000.0 | 30575730.0 | TrisCDPS3 1.fq.gz | 0:150 1:150 | A:2507937903;C:2088057682;G:2095938157;T:2479548210;N:1237048 | 150 | 150 | 2507937903 | 2088057682 | 2095938157 | 2479548210 | 1237048 | SRX4130195 | SRS3344549 | SRA711726 | University of Jinan|Environment | University of Jinan | 2 | 0.92421 | 0.92576 | 0.09405 | 0.09332 | 0.71082 | 0.7148 | 0.47786 | 0.47144 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2018-12-31 | Larval | Larval | Whole Organism | All anatomical structures |