run_metadata: 48321
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48321 | SRR7223669 | SRX4130197 | SRS3344551 | SRP149041 | PRJNA473201 | Danio rerio Genome sequencing | PRJNA473201 | Other | To explore the potential mechanisms underlying wavy notochord caused in zebrafish embryos following exposure to polychlorinated diphenylsulfides | TCDPS3 | strain:Danio rerio|age:10 days|sex:pooled male and female|tissue:whole larvae|BioSampleModel:Model organism or animal | RNA Seq of TCDPS treated zf: 5 day larvae | TCDPS3 | TCDPS3 | TopHat FPKM FDR<0.05 | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina HiSeq 4000 | SRP149041 | TCDPS3_1.fq.gz TCDPS3_2.fq.gz | fastq fastq | 7963502100.0 | 26545007.0 | TCDPS3 2.fq.gz | 0:150 1:150 | A:2163154757;C:1827132936;G:1831483410;T:2140658978;N:1072019 | 150 | 150 | 2163154757 | 1827132936 | 1831483410 | 2140658978 | 1072019 | SRX4130197 | SRS3344551 | SRA711726 | University of Jinan|Environment | University of Jinan | 2 | 0.92803 | 0.92935 | 0.08694 | 0.08709 | 0.71157 | 0.71543 | 0.4691 | 0.46764 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2018-12-31 | Larval | Larval | Whole Organism | All anatomical structures |