run_metadata: 47
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47 | DRR668247 | DRX648349 | DRS458862 | DRP012880 | PRJDB18466 | Comparison of spinal cord regeneration capacity in zebrafish and medaka | PRJDB18466 | Other | Unlike mammals zebrafish have the remarkable ability to regenerate many tissues including the spinal cord. Medaka another model fish species has a low regenerative ability in the spinal cord. Therefore comparisons with them advantageous to revealing regeneration specific mechanisms in the spinal cord. The comparison of the spinal cord regeneration abilities of zebrafish and medaka could be a promising research field to elucidate new factors that determine spinal cord regeneration ability. | pubmed:40278963 | Zebrafish Intact biological replicate 3 | Zebrafish Control 3 | SAMD00799620 | sample name:Zebrafish Control 3|biological replicate:3|biomaterial provider:Center of Medical Innovation and Translational Research Osaka University|collection date:2023 04 21|dev stage:Adult|geo loc name:Japan|sex:not determined|strain:AB Zebrafish|tissue:Spinal cord | DNBSEQ G400 paired end sequencing of SAMD00799620 | DRX648349 | RNA seq of spinal cord in zebrafish at 0wpi control 3 | 1 | Total RNA was extracted using RNeasy Micro Kit Qiagen 74104 with DNase treatment RNase Free DNase Set Qiagen 79254. Libraries were constructed from the amplified total RNA. | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | DNBSEQ | DNBSEQ-G400 | DRP012880 | DNBSEQ G400 paired end sequencing of SAMD00799620 | 13377538600.0 | 66887693.0 | DRR668247 | 0:100 1:100 | A:3725064764;C:2973653932;G:2980883214;T:3695767890;N:2168800 | 100 | 100 | 3725064764 | 2973653932 | 2980883214 | 3695767890 | 2168800 | DRX648349 | DRS458862 | DRA020617 | Osaka University | Osaka University | B | B | biological fallback assumption | bgi | bgi | unknown | cdna_unspecified | unknown | bulk | unknown | unknown | Japan | 2025-05-12 | Adult | Adult | Spinal Cord | Nervous System |