run_metadata: 44993
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44993 | SRR6450489 | SRX3541479 | SRS2819522 | SRP128591 | PRJNA427078 | zebrafish Genome sequencing | PRJNA427078 | Whole Genome Sequencing | Genome re sequencing and transcriptome sequencing | Zebrafish transcriptome | Zebrafish trans | ecotype:lab|age:6 month|sex:missing|tissue:skin muscle|BioSampleModel:Model organism or animal | RNA Seq of zebrafish:adult | WHZEBqrvEAAFRABPEI | WHZEBqrvEAAFRABPEI | skin muscle | RNA-Seq | TRANSCRIPTOMIC | RANDOM | PAIRED | ILLUMINA | HiSeq X Ten | SRP128591 | 161208_I188_FCCA319ANXX_L8_WHZEBqrvEAAFRABPEI-113_2.fq.gz 161208_I188_FCCA319ANXX_L8_WHZEBqrvEAAFRABPEI-113_1.fq.gz | fastq fastq | 3600021250.0 | 14400085.0 | 161208 I188 FCCA319ANXX L8 WHZEBqrvEAAFRABPEI 113 2.fq.gz | 0:125 1:125 | A:934930854;C:868403521;G:876791881;T:918413816;N:1481178 | 125 | 125 | 934930854 | 868403521 | 876791881 | 918413816 | 1481178 | SRX3541479 | SRS2819522 | SRA645021 | BGI | BGI | 2 | 0.9521 | 0.95139 | 0.03254 | 0.03384 | 0.78072 | 0.782 | 0.51124 | 0.50752 | 125 | 125 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2018-01-08 | Adult | Adult | Multi-tissue | Multi-system |