run_metadata: 44977
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44977 | SRR6374793 | SRX3469644 | SRS2757038 | SRP126712 | PRJNA421571 | Danio rerio Raw sequence reads | PRJNA421571 | Whole Genome Sequencing | To compare the different expressed genes between knockout fish and wild type | SL2 3.5hpf replicate2 | strain:AB5|age:3.5hpf|sex:not determined|tissue:embryo|BioSampleModel:Model organism or animal | RNA Seq of danio rerio:embryo | SL2 HIGHT2 | SL2 HIGHT2 | embryos quickly frozen in liquid nitrogen | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina HiSeq 4000 | SRP126712 | SL2_HIGHT2_1.fq.gz SL2_HIGHT2_2.fq.gz | fastq fastq | 6676323300.0 | 22254411.0 | SL2 HIGHT2 2.fq.gz | 0:150 1:150 | A:1767577251;C:1573479421;G:1588807215;T:1745946421;N:512992 | 150 | 150 | 1767577251 | 1573479421 | 1588807215 | 1745946421 | 512992 | SRX3469644 | SRS2757038 | SRA638743 | Institute of Hydrobiology, Chinese Academy of Sciences|Fish Developmental Genetics and Cell Engineering | Institute of Hydrobiology, Chinese Academy of Sciences | 2 | 0.90205 | 0.90648 | 0.02777 | 0.0277 | 0.75584 | 0.75653 | 0.51823 | 0.51604 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2021-01-01 | Blastula | Embryo | Embryo Imprecise | All anatomical structures |