run_metadata: 44974
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44974 | SRR6374790 | SRX3469647 | SRS2757039 | SRP126712 | PRJNA421571 | Danio rerio Raw sequence reads | PRJNA421571 | Whole Genome Sequencing | To compare the different expressed genes between knockout fish and wild type | WT 3.5hpf replicate1 | strain:AB10|age:3.5hpf|sex:not determined|tissue:embryo|BioSampleModel:Model organism or animal | RNA Seq of danio rerio:embryo | WT HIGHT1 | WT HIGHT1 | embryos quickly frozen in liquid nitrogen | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina HiSeq 4000 | SRP126712 | WT_HIGHT1_1.fq.gz WT_HIGHT1_2.fq.gz | fastq fastq | 6664975200.0 | 22216584.0 | WT HIGHT1 1.fq.gz | 0:150 1:150 | A:1719120604;C:1609236924;G:1628143616;T:1708202939;N:271117 | 150 | 150 | 1719120604 | 1609236924 | 1628143616 | 1708202939 | 271117 | SRX3469647 | SRS2757039 | SRA638743 | Institute of Hydrobiology, Chinese Academy of Sciences|Fish Developmental Genetics and Cell Engineering | Institute of Hydrobiology, Chinese Academy of Sciences | 2 | 0.92339 | 0.9242 | 0.0266 | 0.0266 | 0.74728 | 0.74941 | 0.49813 | 0.49574 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2021-01-01 | Blastula | Embryo | Embryo Imprecise | All anatomical structures |