run_metadata: 44060
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44060 | SRR6251107 | SRX3358048 | SRS2657108 | SRP123530 | PRJNA416833 | Nuclear Receptor Disruption Alters Triphenyl Phosphate Induced Cardiotoxicity in Zebrafish Embryos | PRJNA416833 | Other | The objective of this project was to rely on mRNA sequencing to test the hypothesis that triphenyl phosphate TPHP interferes with nuclear receptor signaling pathways involved in cardiac development during zebrafish embryogenesis. | 5uM TPHP B | strain:5D|dev stage:72 hpf|sex:not applicable|tissue:embryo|BioSampleModel:Model organism or animal | 5uM TPHP B | 5uM TPHP B | 5uM TPHP B | QuantSeq three prime mRNA Seq Library Prep Kit FWD | RNA-Seq | TRANSCRIPTOMIC | Oligo-dT | SINGLE | ILLUMINA | Illumina MiniSeq | SRP123530 | TPHP-5-3_S5_L001_R1_001.fastq.gz | fastq | 128293812.0 | 1701231.0 | TPHP 5 3 S5 L001 R1 001.fastq.gz | 0:75.41 1:0 | A:38537387;C:23633923;G:32363285;T:33730392;N:28825 | 75 | 0 | 38537387 | 23633923 | 32363285 | 33730392 | 28825 | SRX3358048 | SRS2657108 | SRA627929 | University of California, Riverside|Environmental Sciences | University of California, Riverside | 1 | 0.85994 | 0.17505 | 0.77869 | 0.56251 | 75 | B | usable mapping rate | illumina | miseq | 3prime | poly_a | lexogen | bulk | unknown | unknown | United States | 2018-03-06 | Larval | Larval | Embryo Imprecise | All anatomical structures |