run_metadata: 44039
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44039 | SRR6232245 | SRX3340671 | SRS2642291 | SRP122564 | PRJNA416165 | liver RNA squence | PRJNA416165 | Metagenomics | Raw sequence reads of liver RNA of four treatment | CL | 3 | strain:not applicable|isolate:liver sample|breed:Nile tilapia|cultivar:not applicable|ecotype:missing|age:4 month|dev stage:not collected|sex:female|tissue:liver|collection date:2014 10|treatment:control in low temperature|BioSampleModel:Model organism or animal | CL | CL | CL | liver RNA | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | Illumina MiSeq | SRP122564 | 30_TTAGGC_L004_R1_001.fastq.gz 30_TTAGGC_L004_R2_001.fastq.gz | fastq fastq | 4476914064.0 | 17765532.0 | 30 TTAGGC L004 R1 001.fastq.gz | 0:126 1:126 | A:1209409451;C:1033074528;G:1051420241;T:1181919392;N:1090452 | 126 | 126 | 1209409451 | 1033074528 | 1051420241 | 1181919392 | 1090452 | SRX3340671 | SRS2642291 | SRA625810 | East China Normal University|LANEH | East China Normal University | 2 | 0.94215 | 0.94059 | 0.06325 | 0.06581 | 0.82582 | 0.82625 | 0.57851 | 0.59911 | 126 | 126 | B | B | biological fallback assumption | illumina | miseq | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2018-01-01 | Adult | Adult | Liver | Liver and Biliary System |