run_metadata: 44033
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44033 | SRR6231893 | SRX3340325 | SRS2641976 | SRP122541 | PRJNA415856 | Defining the transcriptomic landscape of the developing enteric nervous system and its cellular environment | PRJNA415856 | Transcriptome Analysis | Transcriptomic analysis of genetic expression in enteric neurons as compared to other intestinal cells. | pubmed:28403821 | GFP positive cells | en GFP positive JK | strain:phox2b Tgphox2b:EGFP w37|dev stage:7 dpf male and female|tissue:Intestine|biomaterial provider:Kuhlman lab|cell type:Intestinal neurons|BioSampleModel:Model organism or animal | en GFP positive JK r1 | en GFP positive JK r1 fwd | en GFP positive JK r1 fwd | The library was prepapred by the Iowa State DNA facility. | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2500 | SRP122541 | d7phoGFPA_GCCAAT_R1_001.fastq.gz d7phoGFPA_GCCAAT_R2_001.fastq.gz | fastq fastq | 22618935400.0 | 113094677.0 | d7phoGFPA GCCAAT R1 001.fastq.gz | 0:100 1:100 | A:6233619158;C:5097706589;G:5045972110;T:6222785585;N:18851958 | 100 | 100 | 6233619158 | 5097706589 | 5045972110 | 6222785585 | 18851958 | SRX3340325 | SRS2641976 | SRA625723 | Iowa State University|Genetics Development and Cell Biology | Iowa State University | 2 | 0.91266 | 0.9056 | 0.16638 | 0.16643 | 0.68008 | 0.68367 | 0.48483 | 0.48254 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | unknown | unknown | United States | 2017-10-27 | Larval | Larval | Gut | Digestive System |