run_metadata: 42991
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42991 | SRR5892607 | SRX3058331 | SRS2404190 | SRP114766 | PRJNA396480 | Danio rerio Raw sequence reads | PRJNA396480 | Other | A Reduced Zebrafish Transcriptome Method to Assess Environmental Toxicants Using Embryo Test | BPA | breed:TU|isolation source:lab|collection date:2017 01 13|geo loc name:China|tissue:embryos|age:32hpf|identified by:BPA 10 1 batchA|BioSampleModel:Invertebrate | BPA batchB DMSO 2 | 19 | 19 | solvent control for BPA treatments replication 2 of second batch | AMPLICON | TRANSCRIPTOMIC | PCR | SINGLE | ION_TORRENT | Ion Torrent Proton | SRP114766 | BPA-batch2-DMSO-2.gz | fastq | 198715047.0 | 1945773.0 | BPA batchB DMSO 2.gz | 0:102.13 | A:46860862;C:52753060;G:52418957;T:46682168;N:0 | 102 | 46860862 | 52753060 | 52418957 | 46682168 | 0 | SRX3058331 | SRS2404190 | SRA595054 | Zebrafish embryo|School of the environment | Zebrafish embryo | 1 | 0.96434 | 0.00054 | 0.97102 | 0.48108 | 89 | B | usable mapping rate | ion_torrent | ion_torrent | unknown | random_priming | unknown | bulk | unknown | unknown | Unknown | 2017-08-03 | Pharyngula | Embryo | Embryo Imprecise | All anatomical structures |