run_metadata: 42944
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42944 | SRR5855252 | SRX3024518 | SRS2373771 | SRP113255 | PRJNA395216 | mRNA sequencing of larval zebrafish heart tissue | PRJNA395216 | Other | Heart tissue was enriched from 48hpf zebrafish larvae from different experimental conditions. Approximately 200 hearts were collected for each sample. The goals of the study were to profile transcriptional outputs in the cardiac tissue which affects heart development between two different experimental conditions. | Zebrafish 48hpf heart mRNA sequencing control | wildtype control 2 | strain:WT|dev stage:48 hpf determined|tissue:heart|BioSampleModel:Model organism or animal | zebrafish mRNA seq of heart tissue control | wildtype control 2 | wildtype control 2 | hearts encriched from whole animal tissue and mRNA isolated | RNA-Seq | TRANSCRIPTOMIC | other | PAIRED | ILLUMINA | Illumina HiSeq 2500 | SRP113255 | 2_lane5_20161102000_S82_L005_R1_001.fastq.gz 2_lane5_20161102000_S82_L005_R2_001.fastq.gz | fastq fastq | 4865250352.0 | 32008226.0 | 2 lane5 20161102000 S82 L005 R2 001.fastq.gz | 0:76 1:76 | A:1217698162;C:1217336292;G:1210023632;T:1219728654;N:463612 | 76 | 76 | 1217698162 | 1217336292 | 1210023632 | 1219728654 | 463612 | SRX3024518 | SRS2373771 | SRA589703 | University of Iowa|Biology | University of Iowa | 2 | 0.95521 | 0.95457 | 0.03943 | 0.0382 | 0.70285 | 0.7037 | 0.45131 | 0.45255 | 76 | 76 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | other | unknown | bulk | unknown | unknown | United States | 2017-07-20 | Hatching | Embryo | Heart | Cardiovascular System |