run_metadata: 42447
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42447 | SRR7410471 | SRX4281888 | SRS3446892 | SRP151068 | PRJNA387484 | RNA Seq of a Zebrafish Fanconi Mutant | PRJNA387484 | Transcriptome Analysis | We conducted RNA seq analysis of zebrafish fancl mutants and wild type siblings at 4dpf 10dpf 14dpf 18dpf 22dpf 26dpf and 30dpf. RNA was extracted from the whole organism and libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq Kit. | RNA seq library | brca2 mutant 30dpf | brca2 mutant 30dpf | strain:AB|age:30 dpf|sex:not applicable|tissue:whole organism|biomaterial provider:John H. Postlethwait University of Oregon|genotype:brca2 ZM 00057434 / |BioSampleModel:Model organism or animal | RNA Seq of Danio rerio: 30dpf brca2 mutant sample 30 36 | 30dpf brca2 mutant 30 36 | 30dpf brca2 mutant 30 36 | Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit | RNA-Seq | TRANSCRIPTOMIC | PolyA | PAIRED | ILLUMINA | Illumina HiSeq 4000 | SRP151068 | 6899944698.0 | 22847499.0 | brca2 mut 30 36 GAGGTGCT R1.fq.gz | 0:151 1:151 | A:1745582542;C:1669300984;G:1707455172;T:1776814198;N:791802 | 151 | 151 | 1745582542 | 1669300984 | 1707455172 | 1776814198 | 791802 | SRX4281888 | SRS3446892 | SRA726408 | University of Oregon|Institute of Neuroscience | University of Oregon | 2 | 0.91438 | 0.93255 | 0.11037 | 0.09276 | 0.72088 | 0.73024 | 0.50255 | 0.57014 | 151 | 151 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | United States | 2018-06-21 | Juvenile | Juvenile | Whole Organism | All anatomical structures |