run_metadata: 42350
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42350 | SRR7410374 | SRX4281985 | SRS3446891 | SRP151068 | PRJNA387484 | RNA Seq of a Zebrafish Fanconi Mutant | PRJNA387484 | Transcriptome Analysis | We conducted RNA seq analysis of zebrafish fancl mutants and wild type siblings at 4dpf 10dpf 14dpf 18dpf 22dpf 26dpf and 30dpf. RNA was extracted from the whole organism and libraries were prepared with the BIOO NEXTflex Rapid Directional qRNA Seq Kit. | RNA seq library | fancl wildtype 30dpf | fancl wildtype 30dpf | strain:AB|age:30 dpf|sex:not applicable|tissue:whole organism|biomaterial provider:John H. Postlethwait University of Oregon|genotype:fancl nkhg10aEt +/+|BioSampleModel:Model organism or animal | RNA Seq of Danio rerio: 30dpf fancl wild type sample 30 29 | 30dpf fancl wild type 30 29 | 30dpf fancl wild type 30 29 | Strand specific RNA seq library prepared with BIOO NEXTflex Rapid Directional qRNA Seq kit | RNA-Seq | TRANSCRIPTOMIC | PolyA | PAIRED | ILLUMINA | Illumina HiSeq 2500 | SRP151068 | 2995334748.0 | 11886249.0 | fancl wt 30 29 R1.fq.gz | 0:126 1:126 | A:744191069;C:728333183;G:750401765;T:772070330;N:338401 | 126 | 126 | 744191069 | 728333183 | 750401765 | 772070330 | 338401 | SRX4281985 | SRS3446891 | SRA726408 | University of Oregon|Institute of Neuroscience | University of Oregon | 2 | 0.94282 | 0.94989 | 0.10261 | 0.10127 | 0.72119 | 0.72498 | 0.56397 | 0.58255 | 126 | 126 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | United States | 2018-06-21 | Juvenile | Juvenile | Whole Organism | All anatomical structures |