run_metadata: 41970
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41970 | SRR5342766 | SRX2639442 | SRS2047345 | SRP101876 | PRJNA379145 | Transcriptomic analysis of depleted uranium effects on adult zebrafish and progeny | GSE96603 | Transcriptome Analysis | This dataset describe the transcriptomic profiling of adult brain gonades testis and ovaries of adult zebrafish exposed to 20µg/L of depleted uranium for 10 days. The progeny of the exposed fishes were also analysed at two cells stage and 96 hpf Overall design: Biological samples adult dissected tissues and whole embryos and larvae were tested by RNASeq in duplicates | pubmed:28531178;pubmed:28831411 | C2cells r1 | GSM2536438 | source name:2 cells embryos|developmental stage:2 cells embryos|tissue:whole embryo|genotype:wild type AB|treatment:progeny of adult exposed fish | C2cells r1 | Base call with CASAVA v1.7 Mapping with RNASTAR and the exon exon reference from ensembl v85 Quantification of reads to genes from RNASTAR output in quantMode GeneCounts Genome build: Zv10 Supplementary files format and content: Non normalized read count at the gene levels ensembl gene identifier from release 85 | 2 cells embryos | exposure of adults to 20µg/L of depleted uranium for 10 days | total RNA extracted from mouse tissu in Trizol Life Technologies TruSeq mRNA version 2 | developmental stage:2 cells embryos|tissue:whole embryo|genotype:wild type AB|treatment:progeny of adult exposed fish | GSM2536438 | GSM2536438: C2cells r1; Danio rerio; RNA Seq | GSM2536438 | 1 | total RNA extracted from mouse tissu in Trizol Life Technologies TruSeq mRNA version 2 | GEO Accession:GSM2536438 | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 1500 | SRP101876 | C2cells_r1.R1.fastq.gz C2cells_r1.R2.fastq.gz | fastq fastq | 6958698162.0 | 68222531.0 | GSM2536438 r1 | 0:51 1:51 | A:1843299293;C:1637271642;G:1612150278;T:1865725254;N:251695 | 51 | 51 | 1843299293 | 1637271642 | 1612150278 | 1865725254 | 251695 | SRX2639442 | SRS2047345 | SRA545799 | GEO | LECO, SERIS, IRSN | 2 | 0.91123 | 0.91534 | 0.05094 | 0.04945 | 0.79758 | 0.79651 | 0.49208 | 0.4852 | 51 | 51 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | trueseq | bulk | unknown | unknown | France | 2017-03-14 | Cleavage | Embryo | Whole Organism | All anatomical structures |