run_metadata: 41950
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41950 | SRR5342786 | SRX2639462 | SRS2047365 | SRP101876 | PRJNA379145 | Transcriptomic analysis of depleted uranium effects on adult zebrafish and progeny | GSE96603 | Transcriptome Analysis | This dataset describe the transcriptomic profiling of adult brain gonades testis and ovaries of adult zebrafish exposed to 20µg/L of depleted uranium for 10 days. The progeny of the exposed fishes were also analysed at two cells stage and 96 hpf Overall design: Biological samples adult dissected tissues and whole embryos and larvae were tested by RNASeq in duplicates | pubmed:28531178;pubmed:28831411 | U2cells r5 | GSM2536458 | source name:2 cells embryos|developmental stage:2 cells embryos|tissue:whole embryo|genotype:wild type AB|treatment:progeny of adult exposed fish | U2cells r5 | Base call with CASAVA v1.7 Mapping with RNASTAR and the exon exon reference from ensembl v85 Quantification of reads to genes from RNASTAR output in quantMode GeneCounts Genome build: Zv10 Supplementary files format and content: Non normalized read count at the gene levels ensembl gene identifier from release 85 | 2 cells embryos | exposure of adults to 20µg/L of depleted uranium for 10 days | total RNA extracted from mouse tissu in Trizol Life Technologies TruSeq mRNA version 2 | developmental stage:2 cells embryos|tissue:whole embryo|genotype:wild type AB|treatment:progeny of adult exposed fish | GSM2536458 | GSM2536458: U2cells r5; Danio rerio; RNA Seq | GSM2536458 | 1 | total RNA extracted from mouse tissu in Trizol Life Technologies TruSeq mRNA version 2 | GEO Accession:GSM2536458 | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 1500 | SRP101876 | U2cells_r5.R2.fastq.gz U2cells_r5.R1.fastq.gz | fastq fastq | 5964130536.0 | 58471868.0 | GSM2536458 r1 | 0:51 1:51 | A:1592526357;C:1397499784;G:1378816007;T:1595009850;N:278538 | 51 | 51 | 1592526357 | 1397499784 | 1378816007 | 1595009850 | 278538 | SRX2639462 | SRS2047365 | SRA545799 | GEO | LECO, SERIS, IRSN | 2 | 0.90325 | 0.90838 | 0.0333 | 0.03299 | 0.84684 | 0.84581 | 0.48491 | 0.476 | 51 | 51 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | trueseq | bulk | unknown | unknown | France | 2017-03-14 | Cleavage | Embryo | Whole Organism | All anatomical structures |