run_metadata: 41784
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41784 | SRR5162097 | SRX2480051 | SRS1910955 | SRP096313 | PRJNA360680 | S6K1 project raw sequence reads | PRJNA360680 | Other | PLC5shS6K1 | breed:not applicable|strain:not applicable|age:6 dpf provider:not applicable|sex:not collected|tissue:embryro|treatment:PLC5shS6K1|BioSampleModel:Model organism or animal | PLC5shS6K1 | PLC5shS6K1 | PLC5shS6K1 | 1 | RNA-Seq | TRANSCRIPTOMIC | RANDOM | SINGLE | COMPLETE_GENOMICS | Complete Genomics | SRP096313 | 1205157400.0 | 24103148.0 | CL100006841 L02 25 1.fq.gz | 0:50 | A:305738728;C:286350102;G:329378158;T:283136091;N:554321 | 50 | 305738728 | 286350102 | 329378158 | 283136091 | 554321 | SRX2480051 | SRS1910955 | SRA525651 | The Chinese University of Hong Kong|School of Life Sciences | The Chinese University of Hong Kong|School of Life Sciences | 1 | 0.00275 | 0.00036 | 0.99801 | 0.66666 | 50 | T | under 1.2% mapping rate | legacy | early | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2017-01-10 | Larval | Larval | Embryo Imprecise | All anatomical structures |