run_metadata: 41611
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41611 | SRR5086599 | SRX2403892 | SRS1843196 | SRP094738 | PRJNA356682 | Transcriptome sequencing of zebrafish mutants with or without xxx tarda infection | PRJNA356682 | Other | To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition we performed transcriptome analysis. Zebrafish larvae from WT NOD1 / and RIP / were infected with Edwardsiella tarda and collected at 24 hours post infection hpi. | RIP2 Etarda 1 | isolate:RIP2 mutant biological replicate 1|age:7 dpf|dev stage:larvae|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2016 3|BioSampleModel:Model organism or animal | RNA seq of zebrafish RIP2 mutant at 7 dpf | RIP2 Etarda 1 | RIP2 Etarda 1 | 1 | RNA-Seq | TRANSCRIPTOMIC | RANDOM PCR | PAIRED | ILLUMINA | Illumina HiSeq 4000 | SRP094738 | S231_07B_CHG009012-0413lane6-RP-E-tarda-1_L003_R1.fastq.gz S231_07B_CHG009012-0413lane6-RP-E-tarda-1_L003_R2.fastq.gz | fastq fastq | 12517987200.0 | 41726624.0 | S231 07B CHG009012 0413lane6 RP E tarda 1 L003 R1.fastq.gz | 0:150 1:150 | A:3383702176;C:2864897363;G:2969958296;T:3299042555;N:386810 | 150 | 150 | 3383702176 | 2864897363 | 2969958296 | 3299042555 | 386810 | SRX2403892 | SRS1843196 | SRA501516 | Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology | Institute of Hydrobiology, Chinese Academy of Sciences | 2 | 0.92847 | 0.93046 | 0.20764 | 0.20908 | 0.68217 | 0.68889 | 0.58846 | 0.59063 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2020-11-27 | Larval | Larval | Whole Organism | All anatomical structures |