run_metadata: 41610
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41610 | SRR5086600 | SRX2403893 | SRS1843197 | SRP094738 | PRJNA356682 | Transcriptome sequencing of zebrafish mutants with or without xxx tarda infection | PRJNA356682 | Other | To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition we performed transcriptome analysis. Zebrafish larvae from WT NOD1 / and RIP / were infected with Edwardsiella tarda and collected at 24 hours post infection hpi. | WT Etarda 2 | isolate:wild type biological replicate 2|age:7 dpf|dev stage:larvae|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2016 3|BioSampleModel:Model organism or animal | RNA seq of zebrafish wildtype at 7 dpf | WT Etarda 2 | WT Etarda 2 | 1 | RNA-Seq | TRANSCRIPTOMIC | RANDOM PCR | PAIRED | ILLUMINA | Illumina HiSeq 4000 | SRP094738 | S231_07B_CHG009012-0413lane6-WT-E-tarda-2_L003_R1.fastq.gz S231_07B_CHG009012-0413lane6-WT-E-tarda-2_L003_R2.fastq.gz | fastq fastq | 11385997200.0 | 37953324.0 | S231 07B CHG009012 0413lane6 WT E tarda 2 L003 R1.fastq.gz | 0:150 1:150 | A:3100666193;C:2581361422;G:2676308702;T:3027299840;N:361043 | 150 | 150 | 3100666193 | 2581361422 | 2676308702 | 3027299840 | 361043 | SRX2403893 | SRS1843197 | SRA501516 | Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology | Institute of Hydrobiology, Chinese Academy of Sciences | 2 | 0.91592 | 0.91843 | 0.23215 | 0.23276 | 0.67894 | 0.6843 | 0.56756 | 0.57405 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2020-11-27 | Larval | Larval | Whole Organism | All anatomical structures |