run_metadata: 41605
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41605 | SRR5086605 | SRX2403898 | SRS1843202 | SRP094738 | PRJNA356682 | Transcriptome sequencing of zebrafish mutants with or without xxx tarda infection | PRJNA356682 | Other | To investigate the possible mechanism that NOD1/RIP2 impacts larval survival in zebrafish under infectious condition we performed transcriptome analysis. Zebrafish larvae from WT NOD1 / and RIP / were infected with Edwardsiella tarda and collected at 24 hours post infection hpi. | NOD1 Etarda 2 | isolate:NOD1 mutant biological replicate 2|age:7 dpf|dev stage:larvae|sex:pooled male and female|tissue:larvae|biomaterial provider:Chang MX|birth date:2016 3|BioSampleModel:Model organism or animal | RNA seq of zebrafish NOD1 mutant at 7 dpf | NOD1 Etarda 2 | NOD1 Etarda 2 | 1 | RNA-Seq | TRANSCRIPTOMIC | RANDOM PCR | PAIRED | ILLUMINA | Illumina HiSeq 4000 | SRP094738 | S231_07B_CHG009012-0413lane6-ND-E-tarda-2_L003_R1.fastq.gz S231_07B_CHG009012-0413lane6-ND-E-tarda-2_L003_R2.fastq.gz | fastq fastq | 15551299800.0 | 51837666.0 | S231 07B CHG009012 0413lane6 ND E tarda 2 L003 R1.fastq.gz | 0:150 1:150 | A:4265070757;C:3495006741;G:3648563581;T:4142124454;N:534267 | 150 | 150 | 4265070757 | 3495006741 | 3648563581 | 4142124454 | 534267 | SRX2403898 | SRS1843202 | SRA501516 | Institute of Hydrobiology, Chinese Academy of Sciences|Center for Fish Biology and Fishery Biotechnology | Institute of Hydrobiology, Chinese Academy of Sciences | 2 | 0.86759 | 0.86834 | 0.23528 | 0.23586 | 0.68779 | 0.69272 | 0.57804 | 0.57769 | 150 | 150 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2020-11-27 | Larval | Larval | Whole Organism | All anatomical structures |