run_metadata: 41473
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41473 | SRR5457065 | SRX2745133 | SRS1761840 | SRP092128 | PRJNA350712 | Phylogenetic analysis of intron retention in vertebrates | PRJNA350712 | Other | Our study is detailing new evidence for transcriptomic complexity realized by a mechanism of orchestrated intron retention. | zebrafish granulocytes | dre granulocytes | strain: |age:3 month 6 month|sex:male|tissue:kidney marrow|biomaterial provider:Graham Lieschke|cell type:granulocyte|health state:healthy|BioSampleModel:Model organism or animal | RNAseq of zebrafish granulocytes | dre gran TruSeq RNA paired Ill HiSeq2000 | dre gran TruSeq RNA paired Ill HiSeq2000 | RNA seq libraries were prepared from >1 g of total RNA using TruSeq RNA sample prep kit Illumina according to the manufacturersÍ instructions | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | SRP092128 | Zebrafish-1_ZF1_1.fastq.gz Zebrafish-1_ZF1_2.fastq.gz Zebrafish-1_ZF3_1.fastq.gz Zebrafish-1_ZF3_2.fastq.gz | fastq fastq fastq fastq | 27103033264.0 | 134173432.0 | Zebrafish 1 ZF3 2.fastq.gz | 0:101 1:101 | A:7205178092;C:6377884075;G:6326441274;T:7192445241;N:1084582 | 101 | 101 | 7205178092 | 6377884075 | 6326441274 | 7192445241 | 1084582 | SRX2745133 | SRS1761840 | SRA555068 | Centenary Institute|Gene & Stem Cell Therapy Program | Centenary Institute | 2 | 0.97153 | 0.98059 | 0.09216 | 0.09282 | 0.72679 | 0.7234 | 0.46875 | 0.47002 | 101 | 101 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | trueseq | bulk | unknown | unknown | Australia | 2017-04-19 | Adult | Adult | Kidney | Renal System |