run_metadata: 41309
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41309 | SRR4242454 | SRX2163334 | SRS1691357 | SRP089876 | PRJNA341782 | Danio rerio Phenotype or Genotype | PRJNA341782 | Other | Based on the differential comparison of transcriptomes of Homo hetero zygote Het and wild type Wt in vivo protein trap mutagenesis system we have produced series of expression codex of the zebrafish. Here we reported the transcriptomic characteristic of a line with stable deficits found in homozygous Homo expressing the strongest signal of red fluorescent protein mRFP in the central neural system and vascular system. | ho 160 | strain:TU|isolate:homozygous|age:3 dpf|dev stage:3 dpf|sex:not determined|tissue:whole fish|biomaterial provider:Intitute of Medical Sciences University of Toronto Toronto Canada. Xiao yan WEN|birth date:2015 05 01|genotype:homozygous|phenotype:small head abnormal vascular system|treatment:in vivo protein trap mutagenesis|BioSampleModel:Model organism or animal | 1 | ho 160 | ho 160 | 1 | RNA-Seq | TRANSCRIPTOMIC | RANDOM PCR | SINGLE | ILLUMINA | Illumina HiSeq 2000 | SRP089876 | HO.fq.gz | fastq | 568688414.0 | 11605886.0 | HO.fq.gz | 0:49 | A:146833011;C:136838940;G:142141532;T:142831489;N:43442 | 49 | 146833011 | 136838940 | 142141532 | 142831489 | 43442 | SRX2163334 | SRS1691357 | SRA471230 | Guangdong Ocean University|Fisheries College | Guangdong Ocean University | 1 | 0.92072 | 0.03662 | 0.79584 | 0.46051 | 49 | B | usable mapping rate | illumina | hiseq_era | unknown | random_priming | unknown | bulk | unknown | unknown | China | 2016-09-14 | Larval | Larval | Whole Organism | All anatomical structures |