run_metadata: 40984
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40984 | SRR3521412 | SRX1763130 | SRS1437887 | SRP075186 | PRJNA321644 | Danio rerio RNA structure | PRJNA321644 | Whole Genome Sequencing | RNA structure of Danio rerio to understand role of secondary structure dynamics | Danio rerio transcriptome secondary structure | ASWT RNA structure | strain:Wild Type|breed:ASWT|age:24 hpf stage:24hpf|sex:not determined|tissue:Whole embryo|biomaterial provider:CSIR IGIB|BioSampleModel:Model organism or animal | Structure dynamics of zebrafish transcriptome using PAR CLIP | RNA structure of Danio rerio: S1 data | S1 | 1 | OTHER | TRANSCRIPTOMIC | PolyA | SINGLE | ION_TORRENT | Ion Torrent Proton | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>0</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Technical Read</READ_CLASS><READ_TYPE>Adapter</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>5</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | SRP075186 | S1_replicate1.fq.gz | fastq | 3198275111.0 | 46580204.0 | S1 replicate 1 | 0:4 1:64.66 | A:903404566;C:767156853;G:800702475;T:727011217;N:0 | 4 | 64 | 903404566 | 767156853 | 800702475 | 727011217 | 0 | SRX1763130 | SRS1437887 | SRA425688 | CSIR-IGIB | CSIR- Institute of Genomics and Integrative Biology | 1 | 0.72262 | 0.05785 | 0.76552 | 0.50263 | 61 | B | usable mapping rate | ion_torrent | ion_torrent | unknown | poly_a | unknown | bulk | unknown | unknown | India | 2016-05-17 | Pharyngula | Embryo | Whole Organism | All anatomical structures |