run_metadata: 39858
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39858 | SRR2293664 | SRX1158742 | SRS1039790 | SRP062585 | PRJNA293269 | Danio rerio bigheart mutant transcriptome | PRJNA293269 | Whole Genome Sequencing | Zebrafish cardiac transcriptome of big heart mutant. The Bigheart mutant is generated by random mutagenesis in zebrafish ASWT strain by using gene breaking trap GBT PX vector | Bigheart mutant cardiac transcriptome from Danio rerio | Bigheart | breed:ASWT|age:Adult|sex:pooled male and female|tissue:Heart|biomaterial provider:CSIR IGIB|disease:Cardiac hypertrophy|geo loc name:India|BioSampleModel:Model organism or animal | ZEBRAFISH Bigheart hetrozygous cardiac transcriptome | Bigheart hetrozygous cardiac transcriptome | Bigheart heterozygous | Truseq RNA seq with robozero gold | RNA-Seq | TRANSCRIPTOMIC | RANDOM | PAIRED | ILLUMINA | Illumina HiSeq 2500 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | SRP062585 | ZF_24F_hetero_CCGTCC_R2_cat.fastq.gz ZF_24F_hetero_CCGTCC_R1_cat.fastq.gz | fastq fastq | 17775105746.0 | 87995573.0 | Transcriptome of zebrafish Bigheart heterozygous mutant cardiac transcriptome | 0:101 1:101 | A:4910552704;C:3934124661;G:3958965970;T:4968643725;N:2818686 | 101 | 101 | 4910552704 | 3934124661 | 3958965970 | 4968643725 | 2818686 | SRX1158742 | SRS1039790 | SRA290009 | CSIR-IGIB | CSIR- Institute of Genomics and Integrative Biology | 2 | 0.89569 | 0.89916 | 0.30152 | 0.30176 | 0.73598 | 0.73641 | 0.4892 | 0.49332 | 101 | 101 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | random_priming | trueseq | bulk | unknown | unknown | India | 2016-08-19 | Adult | Adult | Heart | Cardiovascular System |