run_metadata: 39751
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39751 | SRR2422954 | SRX1092140 | SRS987764 | SRP060685 | PRJNA289590 | Danio rerio Raw sequence reads | PRJNA289590 | Whole Genome Sequencing | The Goal of the study is to compare RNA expression especially splicing profiles in wildtype and U2af2 KD zebrafish | U2AFAB KD | U2AFA2B KD | U2A2FA and U2AF2B knockdown | treatment:U2AF2A B morpholino|developmental stage:embryo|age:24 hours|strain:wildtype|sex:not applicable|tissue:whole embryo|BioSampleModel:Model organism or animal | U2AF2A and U2AF2B KD | U2AFAB KD | 1 | 1 | RNA-Seq | TRANSCRIPTOMIC | unspecified | PAIRED | ILLUMINA | Illumina HiSeq 2000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>202</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC><READ_SPEC><READ_INDEX>1</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Reverse</READ_TYPE><BASE_COORD>102</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | SRP060685 | zebrafish_U2af2KD_2_2.fastq.gz zebrafish_U2af2KD_2_1.fastq.gz | fastq fastq | 4010033906.0 | 19851653.0 | u2afa u2afb kd | 0:101 1:101 | A:954988404;C:1049486839;G:1028325376;T:975960838;N:1272449 | 101 | 101 | 954988404 | 1049486839 | 1028325376 | 975960838 | 1272449 | SRX1092140 | SRS987764 | SRA276795 | Brown University|Fairbrother Lab | Brown University | 2 | 0.88891 | 0.88704 | 0.22441 | 0.2245 | 0.73781 | 0.74111 | 0.60755 | 0.61314 | 101 | 101 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | unknown | unknown | bulk | unknown | unknown | United States | 2015-09-19 | Pharyngula | Embryo | Whole Organism | All anatomical structures |