run_metadata: 39679
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39679 | SRR2040562 | SRX1038887 | SRS945623 | SRP058729 | PRJNA284830 | MicroRNA expression changes during zebrafish Danio rerio development induced by hexabromocyclododecane | PRJNA284830 | Whole Genome Sequencing | Hexabromocyclododecane HBCD one of the most widely used brominated flame retardants has been found to cause toxic effects on animals. Although microRNAs miRNAs play an important role in many biological and metabolic processes whether and how they are involved in the process of HBCD induced toxicity is largely unknown. In the present study zebrafish embryos were exposed to HBCD at low concentrations of 0 2 20 and 200 nM. Subsequently RNA was isolated from the embryo pool and the miRNAs expression profiles were analyzed using deep sequencing. | Hexabromocyclododecane HBCD one of the most widely used brominated flame retardants has been found to cause toxic effects on animals. Although microRNAs miRNAs play an important role in many biological and metabolic processes whether and how they are involved in the process of HBCD induced toxicity is largely unknown. In the present study zebrafish embryos were exposed to HBCD at low concentrations of 0 2 20 200 nM. Subsequently RNA was isolated from the embryo pool and the miRNAs expression profiles were analyzed using deep sequencing. | zebrafish at normal developmental age of 72hpf in the control rep1 | control 1 | breed:zebrafish|strain:Wild type TU strain|age:72 hpf£¨hpf stage:embryo|sex:pooled male and female|tissue:whole zebrafish|treatment:control 1|BioSampleModel:Model organism or animal | zebrafish at normal developmental age of 72hpf in the control rep1 | Sample control 1 | 1 | 1 | miRNA-Seq | TRANSCRIPTOMIC | other | SINGLE | ILLUMINA | Illumina Genome Analyzer II | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>33</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | SRP058729 | Sample_control-1.fastq.tar.gz | fastq | 398024253.0 | 12061341.0 | Sample control 1 | 0:33 | A:90133666;C:86672655;G:103932053;T:117192591;N:93288 | 33 | 90133666 | 86672655 | 103932053 | 117192591 | 93288 | SRX1038887 | SRS945623 | SRA269780 | MG | Xiamen University | 1 | 0.08082 | 0.02367 | 0.96106 | 0.52033 | 33 | B | usable mapping rate | illumina | early_illumina | unknown | small_rna | unknown | bulk | unknown | unknown | China | 2015-05-27 | Larval | Larval | Whole Organism | All anatomical structures |