run_metadata: 39671
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39671 | SRR2043046 | SRX1041307 | SRS947739 | SRP058729 | PRJNA284830 | MicroRNA expression changes during zebrafish Danio rerio development induced by hexabromocyclododecane | PRJNA284830 | Whole Genome Sequencing | Hexabromocyclododecane HBCD one of the most widely used brominated flame retardants has been found to cause toxic effects on animals. Although microRNAs miRNAs play an important role in many biological and metabolic processes whether and how they are involved in the process of HBCD induced toxicity is largely unknown. In the present study zebrafish embryos were exposed to HBCD at low concentrations of 0 2 20 and 200 nM. Subsequently RNA was isolated from the embryo pool and the miRNAs expression profiles were analyzed using deep sequencing. | HBCD 200nM sample3 | zebrafish at normal developmental age of 72hpf in the 200 nM HBCD rep3 | HBCD 200nM 3 | breed:zebrafish|strain:Wild type TU strain|age:72 hpf£¨hpf stage:embryo|sex:pooled male and female|tissue:whole zebrafish|treatment:HBCD 200nM 3|BioSampleModel:Model organism or animal | zebrafish at normal developmental age of 72hpf in the 200 nM HBCD rep3 | Sample HBCD 200nM 3 | 1 | 1 | miRNA-Seq | TRANSCRIPTOMIC | other | SINGLE | ILLUMINA | Illumina Genome Analyzer II | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>36</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | SRP058729 | Sample_HBCD_200nM-3.fastq.tar.gz | fastq | 549695784.0 | 16657448.0 | Sample HBCD 200nM 3 | 0:33 | A:120885057;C:120386921;G:146939259;T:161323403;N:161144 | 33 | 120885057 | 120386921 | 146939259 | 161323403 | 161144 | SRX1041307 | SRS947739 | SRA269780 | MG | Xiamen University | 1 | 0.13819 | 0.03714 | 0.94968 | 0.52004 | 33 | B | usable mapping rate | illumina | early_illumina | unknown | small_rna | unknown | bulk | unknown | unknown | China | 2015-09-18 | Larval | Larval | Whole Organism | All anatomical structures |