run_metadata: 39647
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39647 | SRR2020637 | SRX1030025 | SRS938358 | SRP058038 | PRJNA283169 | Danio rerio Raw sequence reads | PRJNA283169 | Other | RNA sequencing of whole head and Hcrt cells of 6dpf larvae zebrafish. | EGFP+ 2 | EGFP+ | breed:AB|dev stage:6dpf|sex:pooled male and female|tissue:neurons|BioSampleModel:Model organism or animal | Transcriptional profiling of hypocretin neurons identifies the sleep regulator Kcnh4a | EGFP+ 3 | EGFP+ 3 | EGFP FAC sorted cell representing Hcrt neurons. Biological replicate 3 | RNA-Seq | TRANSCRIPTOMIC | PolyA | SINGLE | ILLUMINA | Illumina HiSeq 2000 | <SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>50</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR> | SRP058038 | loader:latf load | 5_yelin_GGCTAC_L002_R2_001.fastq 5_yelin_GGCTAC_L002_R1_001.fastq | fastq fastq | 1560921064.0 | 7727332.0 | EGFP+ 3 | 0:101 1:101 | A:457609649;C:326096117;G:333133118;T:425493422;N:18588758 | 101 | 101 | 457609649 | 326096117 | 333133118 | 425493422 | 18588758 | SRX1030025 | SRS938358 | SRA266465 | Bar Ilan University|Dr. Lior Appelbaum | Bar Ilan University | 2 | 0.70147 | 0.67398 | 0.38233 | 0.37219 | 0.76611 | 0.78459 | 0.55856 | 0.56314 | 101 | 101 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | Israel | 2015-05-18 | Larval | Larval | Brain | Nervous System |