run_metadata: 3870
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3870 | ERR1442818 | ERX1513195 | ERS1079229 | ERP014517 | PRJEB12982 | Baseline expression from transcriptional profiling of zebrafish developmental stages 3 | Baseline_expression_from_transcriptional_profiling_of_zebrafish_developmental_stages_3-sc-4130 | Transcriptome Analysis | RNA Seq data was generated from RNA of wild type zebrafish embryo pools at different stages of development for baseline transcriptional profiling | ArrayExpress:E ERAD 475 | ZMP phenotype 130 D | SAMEA3892095 | Wellcome Sanger Institute | ArrayExpress DevelopmentalStage:Segmentation:1 4 somites ZFS:0000023|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Species:Danio rerio|ENA first public:2016 06 06|ENA last update:2016 03 10|External Id:SAMEA3892095|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2016 06 06T15:24:12Z|INSDC last update:2016 03 10T13:38:10Z|INSDC status:public|Submitter Id:74a032c0 e60c 11e5 bc69 3c4a9275d6c6|common name:zebrafish|sample description:RNA from a pool of 12 single wild type zebrafish embryos plus ERCC spike mix 2 Ambion. The sample has been DNAse treated.|sample name:74a032c0 e60c 11e5 bc69 3c4a9275d6c6|strain:mixed | Illumina HiSeq 2500 paired end sequencing | SC EXP 19912 1#78 | 16564973 | Illumina sequencing of library 16564973 constructed from sample accession ERS1079229 for study accession ERP014517. This is part of an Illumina multiplexed sequencing run 19912 1. This submission includes reads tagged with the sequence GCATGGCT. | RNA seq dUTP eukaryotic | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2500 | ERP014517 | Illumina HiSeq 2500 paired end sequencing | ENA FIRST PUBLIC:2016 06 06|ENA LAST UPDATE:2018 11 16 | 19912_1#78.cram | cram | 304583800.0 | 1522919.0 | SC RUN 19912 1#78 | 0:100 1:100 | A:80690767;C:71447063;G:71177771;T:80861322;N:406877 | 100 | 100 | 80690767 | 71447063 | 71177771 | 80861322 | 406877 | ERX1513195 | ERS1079229 | ERA648700 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.95528 | 0.95695 | 0.15713 | 0.15557 | 0.73087 | 0.73241 | 0.52967 | 0.52496 | 100 | 100 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2016-03-10 | Segmentation | Embryo | Whole Organism | All anatomical structures |